Package: OmopStudyBuilder 0.1.1

Folu Akintola

OmopStudyBuilder: Build Reproducible Network Studies for OMOP Common Data Model

Streamlines the setup and execution of network studies using the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM). Creates standardised project structures with template code, manages dependencies with 'renv', provides code review utilities, and supports containerised execution with 'Docker' for reproducible multi-site studies. Includes 'GitHub' integration for collaboration and version control.

Authors:Folu Akintola [aut, cre], Edward Burn [aut], Martí Català [aut], Marta Alcalde-Herraiz [ctb]

OmopStudyBuilder_0.1.1.tar.gz
OmopStudyBuilder_0.1.1.zip(r-4.7-any)OmopStudyBuilder_0.1.1.zip(r-4.6-any)OmopStudyBuilder_0.1.1.zip(r-4.5-any)
OmopStudyBuilder_0.1.1.tgz(r-4.6-any)OmopStudyBuilder_0.1.1.tgz(r-4.5-any)
OmopStudyBuilder_0.1.1.tar.gz(r-4.7-any)OmopStudyBuilder_0.1.1.tar.gz(r-4.6-any)
OmopStudyBuilder_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OmopStudyBuilder/json (API)

# Install 'OmopStudyBuilder' in R:
install.packages('OmopStudyBuilder', repos = c('https://oxford-pharmacoepi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oxford-pharmacoepi/omopstudybuilder/issues

Pkgdown/docs site:https://oxford-pharmacoepi.github.io

On CRAN:

Conda:

6.63 score 4 stars 11 scripts 355 downloads 8 exports 27 dependencies

Last updated from:5ecc7db6ab. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK324
source / vignettesOK206
linux-release-x86_64OK383
macos-release-arm64OK145
macos-oldrel-arm64OK158
windows-develOK147
windows-releaseOK152
windows-oldrelOK167
wasm-releaseOK136

Exports:dockeriseStudyinitStudylinkGitHubpushDockerImagereviewStudyrunRStudiorunStudystopStudy

Dependencies:blobclicpp11DBIdbplyrdplyrgenericsgluejsonlitelifecyclemagrittromopgenericspillarpkgconfigpurrrR6rlangsnakecasestringistringrtibbletidyrtidyselectutf8vctrswhiskerwithr

dockerWrapper
Overview | Build an image | Run interactively (RStudio Server) | Run in automated mode | Stop containers | Push to Docker Hub
Rendered fromdockerWrapper.Rmdusingknitr::rmarkdown

Last update: 2026-03-04
Started: 2026-02-26

initStudy
Introduction | Basic usage | Diagnostics-only and study-only setups | Diagnostics-only project | Study-only project (no diagnostics templates) | What to do after initStudy() | Building and Distributing Your Study | Building the Docker Image | Distribution Options | Option 1: Docker Hub (Online) | Interactive vs Automated Execution
Rendered frominitStudy.Rmdusingknitr::rmarkdown

Last update: 2026-03-04
Started: 2026-03-03

reviewStudy
Overview | Review files in a study folder | Review dependencies
Rendered fromreviewStudy.Rmdusingknitr::rmarkdown

Last update: 2026-03-04
Started: 2026-02-26