{
  "_id": "6a54d3f2ff0138dec5d671b2",
  "Type": "Package",
  "Package": "OmopStudyBuilder",
  "Title": "Build Reproducible Network Studies for OMOP Common Data Model",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(\"Folu\", \"Akintola\", , \"folu.akintola@ndorms.ox.ac.uk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0588-2298\")),\nperson(\"Edward\", \"Burn\", , \"edward.burn@ndorms.ox.ac.uk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-9286-1128\")),\nperson(\"Martí\", \"Català\", , \"marti.catalasabate@ndorms.ox.ac.uk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3308-9905\")),\nperson(\"Marta\", \"Alcalde-Herraiz\", , \"marta.alcaldeherraiz@ndorms.ox.ac.uk\", role = \"ctb\",\ncomment = c(ORCID = \"0009-0002-4405-1814\"))\n)",
  "Description": "Streamlines the setup and execution of network studies\nusing the Observational Medical Outcomes Partnership (OMOP)\nCommon Data Model (CDM). Creates standardised project\nstructures with template code, manages dependencies with\n'renv', provides code review utilities, and supports\ncontainerised execution with 'Docker' for reproducible\nmulti-site studies.  Includes 'GitHub' integration for\ncollaboration and version control.",
  "License": "Apache License (>= 2)",
  "URL": "https://oxford-pharmacoepi.github.io/OmopStudyBuilder/",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "BugReports": "https://github.com/oxford-pharmacoepi/OmopStudyBuilder/issues",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://oxford-pharmacoepi.r-universe.dev",
  "Date/Publication": "2026-07-13 09:05:43 UTC",
  "RemoteUrl": "https://github.com/oxford-pharmacoepi/omopstudybuilder",
  "RemoteRef": "HEAD",
  "RemoteSha": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-13 11:55:56 UTC",
    "User": "root"
  },
  "Author": "Folu Akintola [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0588-2298>),\nEdward Burn [aut] (ORCID: <https://orcid.org/0000-0002-9286-1128>),\nMartí Català [aut] (ORCID: <https://orcid.org/0000-0003-3308-9905>),\nMarta Alcalde-Herraiz [ctb] (ORCID:\n<https://orcid.org/0009-0002-4405-1814>)",
  "Maintainer": "Folu Akintola <folu.akintola@ndorms.ox.ac.uk>",
  "_user": "oxford-pharmacoepi",
  "_type": "src",
  "_file": "OmopStudyBuilder_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/b76b857215702cff03102d3d9e0a5caa452b9539823d935fff5d11fa45fe77e2",
  "_filesize": 223801,
  "_sha256": "b76b857215702cff03102d3d9e0a5caa452b9539823d935fff5d11fa45fe77e2",
  "_expires": "2026-10-21T12:02:56.000Z",
  "_created": "2026-07-13T11:55:56.000Z",
  "_published": "2026-07-13T12:02:58.092Z",
  "_jobs": [
    {
      "job": 86809412037,
      "time": 324,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8278296272"
    },
    {
      "job": 86809412332,
      "time": 383,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8278320783"
    },
    {
      "job": 86809412002,
      "time": 158,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8278270017"
    },
    {
      "job": 86809412023,
      "time": 145,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8278267103"
    },
    {
      "job": 86808755415,
      "time": 206,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8278166541"
    },
    {
      "job": 86809412003,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8278222316"
    },
    {
      "job": 86809412005,
      "time": 147,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8278226929"
    },
    {
      "job": 86809412070,
      "time": 167,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8278234805"
    },
    {
      "job": 86809412007,
      "time": 152,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8278228807"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653",
  "_status": "success",
  "_upstream": "https://github.com/oxford-pharmacoepi/omopstudybuilder",
  "_commit": {
    "id": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
    "author": "Folu Akintola <moronfoluwaakintola@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #113 from oxford-pharmacoepi/fix/issue_112\n\nUpdate README.md",
    "time": 1783933543
  },
  "_maintainer": {
    "name": "Folu Akintola",
    "email": "folu.akintola@ndorms.ox.ac.uk",
    "login": "foluwa",
    "linkedin": "in/moronfoluwaakintola",
    "orcid": "0000-0002-0588-2298",
    "description": "Data Scientist, Software and Machine Learning Engineer",
    "uuid": 20495300
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "omopgenerics",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "whisker",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "gert",
      "role": "Suggests"
    },
    {
      "package": "getPass",
      "role": "Suggests"
    },
    {
      "package": "gh",
      "role": "Suggests"
    },
    {
      "package": "here",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "processx",
      "role": "Suggests"
    },
    {
      "package": "purrr",
      "role": "Suggests"
    },
    {
      "package": "renv",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "scales",
      "role": "Suggests"
    },
    {
      "package": "stringr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "oxford-pharmacoepi",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-47",
      "n": 4
    },
    {
      "week": "2025-48",
      "n": 1
    },
    {
      "week": "2025-49",
      "n": 3
    },
    {
      "week": "2025-51",
      "n": 4
    },
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-04",
      "n": 1
    },
    {
      "week": "2026-09",
      "n": 7
    },
    {
      "week": "2026-10",
      "n": 4
    },
    {
      "week": "2026-13",
      "n": 1
    },
    {
      "week": "2026-15",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 4
    },
    {
      "week": "2026-17",
      "n": 1
    },
    {
      "week": "2026-21",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 1
    },
    {
      "week": "2026-24",
      "n": 2
    },
    {
      "week": "2026-29",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "foluwa",
      "count": 175,
      "uuid": 20495300
    },
    {
      "user": "edward-burn",
      "count": 23,
      "uuid": 9583964
    },
    {
      "user": "catalamarti",
      "count": 5,
      "uuid": 18575244
    },
    {
      "user": "martaalcalde",
      "count": 1,
      "uuid": 91142894
    },
    {
      "user": "sshenzha",
      "count": 1,
      "uuid": 65540202
    }
  ],
  "_userbio": {
    "uuid": 81571139,
    "type": "organization",
    "name": "oxford-pharmacoepi",
    "followers": 51,
    "description": "Prieto-Alhambra Group | Pharmaco- and Device epidemiology"
  },
  "_downloads": {
    "count": 355,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OmopStudyBuilder"
  },
  "_devurl": "https://github.com/oxford-pharmacoepi/omopstudybuilder",
  "_pkgdown": "https://oxford-pharmacoepi.github.io/OmopStudyBuilder/",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/OmopStudyBuilder.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/oxford-pharmacoepi/omopstudybuilder",
  "_realowner": "oxford-pharmacoepi",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-04-28"
    },
    {
      "version": "0.1.1",
      "date": "2026-05-11"
    }
  ],
  "_exports": [
    "dockeriseStudy",
    "initStudy",
    "linkGitHub",
    "pushDockerImage",
    "reviewStudy",
    "runRStudio",
    "runStudy",
    "stopStudy"
  ],
  "_help": [
    {
      "page": "dockeriseStudy",
      "title": "Build a Docker image for an OMOP study",
      "topics": [
        "dockeriseStudy"
      ]
    },
    {
      "page": "initStudy",
      "title": "Creates initial directory for an OMOP CDM network study",
      "topics": [
        "initStudy"
      ]
    },
    {
      "page": "linkGitHub",
      "title": "Link study directory to GitHub repository",
      "topics": [
        "linkGitHub"
      ]
    },
    {
      "page": "pushDockerImage",
      "title": "Push a Docker image to Docker Hub",
      "topics": [
        "pushDockerImage"
      ]
    },
    {
      "page": "reviewStudy",
      "title": "Review a study directory",
      "topics": [
        "reviewStudy"
      ]
    },
    {
      "page": "runRStudio",
      "title": "Run RStudio Server for interactive study execution",
      "topics": [
        "runRStudio"
      ]
    },
    {
      "page": "runStudy",
      "title": "Run study in automated mode with real-time log streaming",
      "topics": [
        "runStudy"
      ]
    },
    {
      "page": "stopStudy",
      "title": "Stop a running OmopStudyBuilder container (automated or RStudio)",
      "topics": [
        "stopStudy"
      ]
    }
  ],
  "_readme": "https://github.com/oxford-pharmacoepi/omopstudybuilder/raw/HEAD/README.md",
  "_rundeps": [
    "blob",
    "cli",
    "cpp11",
    "DBI",
    "dbplyr",
    "dplyr",
    "generics",
    "glue",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "omopgenerics",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rlang",
    "snakecase",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "whisker",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "dockerWrapper.Rmd",
      "filename": "dockerWrapper.html",
      "title": "dockerWrapper",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Build an image",
        "Run interactively (RStudio Server)",
        "Run in automated mode",
        "Stop containers",
        "Push to Docker Hub"
      ],
      "created": "2026-02-26 10:53:25",
      "modified": "2026-03-04 15:35:18",
      "commits": 3
    },
    {
      "source": "initStudy.Rmd",
      "filename": "initStudy.html",
      "title": "initStudy",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Basic usage",
        "Diagnostics-only and study-only setups",
        "Diagnostics-only project",
        "Study-only project (no diagnostics templates)",
        "What to do after initStudy()",
        "Building and Distributing Your Study",
        "Building the Docker Image",
        "Distribution Options",
        "Option 1: Docker Hub (Online)",
        "Interactive vs Automated Execution"
      ],
      "created": "2026-03-03 11:34:12",
      "modified": "2026-03-04 15:35:18",
      "commits": 3
    },
    {
      "source": "reviewStudy.Rmd",
      "filename": "reviewStudy.html",
      "title": "reviewStudy",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Review files in a study folder",
        "Review dependencies"
      ],
      "created": "2026-02-26 10:53:25",
      "modified": "2026-03-04 15:35:18",
      "commits": 3
    }
  ],
  "_score": 6.625723909525756,
  "_indexed": true,
  "_nocasepkg": "omopstudybuilder",
  "_universes": [
    "oxford-pharmacoepi",
    "foluwa"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-13T11:58:57.000Z",
      "distro": "resolute",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/a63a2848ac550f89e9b58333409ab362d3bafcbc882d28496272093a46a120ee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-13T11:59:08.000Z",
      "distro": "resolute",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/0bd96faad61080d33e0b83fe743c76d19e0f9ebf2267fc835df4c4636dc574ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-13T11:59:18.000Z",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/3805ecd30627891f24442b35392c65401ffb9baacf23d2293c6e168388850170",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-13T11:59:18.000Z",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/54d30f57aeb2422b81dcd90b4ad43c2c6f25e034100014b5c320914905c52eee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-07-13T11:58:28.000Z",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/72f5f683c6f53c26bbb1d14d7e62ead5f72ed51f3f3ed12efe3d08bbf17d342d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-13T11:57:09.000Z",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/670738150cda3bd92ea33c77687eac13fca074fe7ad71cd7b49f10739426bbeb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-13T11:57:28.000Z",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/5a81a65f9664917609e9b05a41f89e2b297d0bed380c839486a75eaf7d4363b3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-13T11:57:11.000Z",
      "commit": "5ecc7db6ab8fa7d500c8a9b7e70a0419af3fc562",
      "fileid": "https://r2.ropensci.org/4cb1a635820fa0de5622b2d4723363a935e1fa5d6c68d1c93c843966c7eda27b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/oxford-pharmacoepi/actions/runs/29247760653"
    }
  ]
}